+ Original articles in refereed journals and books chapters

«An automatic deep learning-based system for screening and management of DME»

Galdran, A., Chakor, H., Kabir, W., Kobbi, R., Liu, B., Dolz, J. and Ben Ayed, I..”
Diabetes Research and Clinical Practice 2022.

«Calibrating segmentation networks with margin-based label smoothing»

Murugesan, Balamurali, Liu, Bingyuan, Galdran, Adrian, Ayed, Ismail Ben and Dolz, Jose.”
Medical Image Analysis 2023.

«Segmentation with mixed supervision: Confidence maximization helps knowledge distillation»

Liu, Bingyuan, Desrosiers, Christian, Ben Ayed, Ismail and Dolz, Jose.”
Medical Image Analysis 2023.

«Source-free domain adaptation for image segmentation»

Bateson, Mathilde, Kervadec, Hoel, Dolz, Jose, Lombaert, Hervé and Ben Ayed, Ismail.”
Medical Image Analysis 2022.

«Deep interpretable classification and weakly-supervised segmentation of histology images via max-min uncertainty»

Soufiane Belharbi, Jérôme Rony, Jose Dolz, Ismail Ben Ayed, Luke McCaffrey, Eric Granger”
IEEE Transactions on Medical Imaging 2022.

«State-of-the-art retinal vessel segmentation with minimalistic models»

Adrian Galdran, André Anjos, José Dolz, Hadi Chakor, Hervé Lombaert, Ismail Ben Ayed”
Scientific Reports 2022.

«Adversarial robustness via Fisher-Rao Regularization»

Marine Picot, Francisco Messina, Malik Boudiaf, Fabrice Labeau, Ismail Ben Ayed, Pablo Piantanida”
IEEE Transactions on Pattern Analysis and Machine Intelligence 2022.

«Constrained domain adaptation for image segmentation»

M.Bateson, J. Dolz, H. Kervadec, H. Lombaert, I. Ben Ayed”
IEEE Transactions on Medical Imaging 2021.

«Deep clustering: On the link between discriminative models and K-means»

Mohammed Jabi, Marco Pedersoli, Amar Mitiche, Ismail Ben Ayed”
IEEE Transactions on Pattern Analysis and Machine Intelligence 2021.

«Boundary loss for highly unbalanced segmentation»

Hoel Kervadec, Jihene Bouchtiba, Christian Desrosiers, Eric Granger, José Dolz, Ismail Ben Ayed”
Medical Image Analysis 2021.

«Flow guided mutual attention for person re-identification»

Madhu Kiran, Amran Bhuiyan, Le Thanh Nguyen-Meidine, Louis-Antoine Blais-Morin, Ismail Ben Ayed, Eric Granger”
Image and Vision Computing 2021.

«Exploiting prunability for person re-identification»

Hugo Masson, Amran Bhuiyan, Le Thanh Nguyen-Meidine, Mehrsan Javan, Parthipan Siva, Ismail Ben Ayed, Eric Granger”
Eurasip Journal on Image and Video Processing 2021.

«Annotation-efficient deep learning for automatic medical image segmentation»

Shanshan Wang, Cheng Li, Rongpin Wang, Zaiyi Liu, Meiyun Wang, Hongna Tan, Yaping Wu, Xinfeng Liu, Hui Sun, Rui Yang, Xin Liu, Jie Chen, Huihui Zhou, Ismail Ben Ayed, Hairong Zheng”
Nature Communications 2021.

«Deep CNN ensembles and suggestive annotations for infant brain MRI segmentation»

Jose Dolz, Christian Desrosiers, Li Wang, Jing Yuan, Dinggang Shen, Ismail Ben Ayed”
Computerized Medical Imaging and Graphics 2020.

«Non-uniform label smoothing for diabetic retinopathy grading from retinal fundus images with deep neural networks»

Adrian Galdran, Jihed Chelbi, Riadh Kobi, José Dolz, Hervé Lombaert, Ismail Ben Ayed, Hadi Chakor”
Translational Vision Science and Technology 2020.

«Discretely-constrained deep network for weakly supervised segmentation»

Jizong Peng, Hoel Kervadec, Jose Dolz, Ismail Ben Ayed, Marco Pedersoli, Christian Desrosiers”
Neural Networks 2020.

«3D motion estimation of left ventricular dynamics using MRI and track-to-track fusion»

Kumaradevan Punithakumar, Ismail Ben Ayed, Abraam S.Soliman, Aashish Goela, Ali Islam, Shuo Li, Michelle Noga”
IEEE Journal of Translational Engineering in Health and Medicine 2020.

«An ILP model for multi-label MRFs with connectivity constraints»

Ruobing Shen, Bo Tang, Andrea Lodi, Andrea Tramontani, Ismail Ben Ayed”
IEEE Transactions on Image Processing 2020.

«HyperDense-Net: A hyper-densely connected CNN for multi-modal image segmentation»

Jose Dolz, Karthik Gopinath, Jing Yuan, Herve Lombaert, Christian Desrosiers, Ismail Ben Ayed”
IEEE Transactions on Medical Imaging 2019.

«Automatic classification and triage of diabetic retinopathy from retinal images based on a convolutional neural networks (CNN) method»

Adrian Galdran, Hadi Chakor, Abdulaziz Abdulaziz, Ryad Kobbi, Argyrios Christodoulidis, Jihed Chelbi, Marc-André Racine, Ismail Ben Ayed”
Acta Ophthalmologica 2019.

«Constrained-CNN losses for weakly supervised segmentation»

Hoel Kervadec, Jose Dolz, Meng Tang, Éric Granger, Yuri Boykov, Ismail Ben Ayed”
Medical Image Analysis 2019.

«Kernel clustering: density biases and solutions»

Dmitrii Marin, Meng Tang, Ismail Ben Ayed, Yuri Y.Boykov”
IEEE Transactions on Pattern Analysis and Machine Intelligence 2019.

«Kernel cuts: Kernel and spectral clustering meet regularization»

Meng Tang, Dmitrii Marin, Ismail Ben\xa0Ayed, Yuri Boykov”
International Journal of Computer Vision 2019.

«Benchmark on automatic six-month-old infant brain segmentation algorithms: the iSeg-2017 challenge»

Li Wang, Dong Nie, Li Guannan, Élodie Puybareau, Jose Dolz, Qian Zhang, Fan Wang, Jing Xia, Zhengwang Wu, Jia-Wei Chen, Kim-Han Thung, Toan Duc Bui, Jitae Shin, Guodong Zeng, Guoyan Zheng, Vladimir S.Fonov, Andrew Doyle, Yongchao Xu, Pim Moeskops, Josien P. W. Pluim, Christian Desrosiers, Ismail Ben Ayed, Gerard Sanroma, Oualid M. Benkarim, Adrià Casamitjana, Verónica Vilaplana, Weili Lin, Gang Li, Dinggang Shen”
IEEE Transactions on Medical Imaging 2019.

«Quantitative identification of nonmuscle-invasive and muscle-invasive bladder carcinomas: a multiparametric MRI radiomics analysis»

Xiaopan Xu, Xi Zhang, Qian Tian, Huanjun Wang, Long-Biao Cui, Shurong Li, Xing Tang, Baojun Li, Jose Dolz, Ismail Ben Ayed, Zhengrong Liang, Jing Yuan, Peng Du, Hongbing Lu, Yang Liu”
Journal of Magnetic Resonance Imaging 2019.

«Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images»

Aaron Carass, Jennifer L.Cuzzocreo, Shuo Han, Carlos R. Hernandez-Castillo, Paul E. Rasser, Melanie Ganz, Vincent Beliveau, Jose Dolz, Ismail Ben Ayed, Christian Desrosiers, Benjamin Thyreau, José E. Romero, Pierrick Coupé, José V. Manjón, Vladimir S. Fonov, D. Louis Collins, Sarah H. Ying, Chiadi U. Onyike, Deana Crocetti, Bennett A. Landman, Stewart H. Mostofsky, Paul M. Thompson, Jerry L. Prince”
NeuroImage 2018.

«3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study»

Jose Dolz, Christian Desrosiers, Ismail Ben Ayed”
NeuroImage 2018.

«Multiregion segmentation of bladder cancer structures in MRI with progressive dilated convolutional networks»

Jose Dolz, Xiaopan Xu, Jérôme Rony, Jing Yuan, Yang Liu, Éric Granger, Christian Desrosiers, Xi Zhang, Ismail Ben Ayed, Hongbing Lu”
Medical Physics 2018.

«Esophagus segmentation in CT via 3D fully convolutional neural network and random walk»

Tobias Fechter, Sonja Adebahr, Dimos Baltas, Ismail Ben Ayed, Christian Desrosiers, Jose Dolz”
Medical Physics 2017.

«Local submodularization for binary pairwise energies»

Lena Gorelick, Yuri Boykov, Olga Veksler, Ismail Ben Ayed, Andrew Delong”
IEEE Transactions on Pattern Analysis and Machine Intelligence 2017.

«Spine labeling in MRI via regularized distribution matching»

Seyed-Parsa Hojjat, Ismail Ayed, Gregory J.Garvin, Kumaradevan Punithakumar”
International Journal of Computer Assisted Radiology and Surgery 2017.

«A practical algorithm for the retrieval of floe size distribution of Arctic sea ice from high-resolution satellite Synthetic Aperture Radar imagery»

Byong jun Hwang, Jinchang Ren, Samuel McCormack, Craig Berry, Ismail Ben Ayed, Hans C.Graber, Erchan Aptoula”
Elementa : Science of Anthropocene 2017.

«Regularised differentiation for image derivatives»

Yosra Mathlouthi, Amar Mitiche, Ismail Ben Ayed”
IET Image Processing 2017.

«Monocular, boundary-preserving joint recovery of scene flow and depth»

Yosra Mathlouthi, Amar Mitiche, Ismail Ben Ayed”
Frontiers in ICT 2016.

«Spine labeling in axial magnetic resonance imaging via integral kernels»

Brandon Miles, Ismail Ben Ayed, Seyed-Parsa Hojjat, Michael H.Wang, Shuo Li, Aaron Fenster, Gregory J. Garvin”
Computerized Medical Imaging and Graphics 2016.

«Detecting left ventricular impaired relaxation in cardiac MRI using moving mesh correspondences»

Kumaradevan Punithakumar, Ismail Ben Ayed, Mariam Afshin, Aashish Goela, Ali Islam, Shuo Li, Pierre Boulanger, Harald Becher, Michelle Noga”
Computer Methods and Programs in Biomedicine 2016.

«Distribution matching with the Bhattacharyya similarity: a bound optimization framework»

Ismail Ben Ayed, Kumaradevan Punithakumar, Shuo Li”
IEEE Transactions on Pattern Analysis and Machine Intelligence 2015.

«Monocular concurrent recovery of structure and motion scene flow»

Amar Mitiche, Yosra Mathlouthi, Ismail Ben Ayed”
Frontiers in ICT 2015.

«3D multimodal MRI brain glioma tumor and edema segmentation: a graph cut distribution matching approach»

Ines Njeh, Lamia Sallemi, Ismail Ben Ayed, Khalil Chtourou, Stephane Lehericy, Damien Galanaud, Ahmed Ben Hamida”
Computerized Medical Imaging and Graphics 2015.

«Right ventricle segmentation from cardiac MRI: a collation study»

Caroline Petitjean, Maria A.Zuluaga, Wenjia Bai, Jean-Nicolas Dacher, Damien Grosgeorge, Jérôme Caudron, Su Ruan, Ismail Ben Ayed, M. Jorge Cardoso, Hsiang-Chou Chen, Daniel Jimenez-Carretero, Maria J. Ledesma-Carbayo, Christos Davatzikos, Jimit Doshi, Guray Erus, Oskar M. O. Maier, Cyrus M. S. Nambakhsh, Yangming Ou, Sébastien Ourselin, Chun-Wei Peng, Nicholas S. Peters, Terry M. Peters, Martin Rajchl, Daniel Rueckert, Andres Santos, Wenzhe Shi, Ching-Wei Wang, Haiyan Wang, Jing Yuan”
Medical Image Analysis 2015.

«Right ventricular segmentation in cardiac MRI with moving mesh correspondences»

Kumaradevan Punithakumar, Michelle Noga, Ismail Ben Ayed, Pierre Boulanger”
Computerized Medical Imaging and Graphics 2015.

«Regional assessment of cardiac left ventricular myocardial function via MRI statistical features»

Mariam Afshin, Ismail Ben Ayed, Kumaradevan Punithakumar, Max Law, Ali Islam, Aashish Goela, Terry Peters, Shuo Li”
IEEE Transactions on Medical Imaging 2014.

«Convex-relaxed kernel mapping for image segmentation»

Mohamed Ben Salah, Ismail Ben Ayed, Yuan Jing, Zhang Hong”
IEEE Transactions on Image Processing 2014.

«Spine image fusion via graph cuts»

Brandon Miles, Ismail Ben Ayed, Max W.K. Law, Greg Garvin, Aaron Fenster, Shuo Li”
IEEE Transactions on Biomedical Engineering 2013.

«Left ventricle segmentation in MRI via convex relaxed distribution matching»

Cyrus M.S. Nambakhsh, Yuan Jing, Kumaradevan Punithakumar, Aashish Goela, Martin Rajchl, Terry M. Peters, Ismail Ben Ayed”
Medical Image Analysis 2013.

«Regional heart motion abnormality detection: An information theoretic approach»

Kumaradevan Punithakumar, Ismail Ben Ayed, Ali Islam, Aashish Goela, Ian G.Ross, Jaron Chong, Shuo Li”
Medical Image Analysis 2013.

«Max-flow segmentation of the left ventricle by recovering subject-specific distributions via a bound of the Bhattacharyya measure»

Ismail Ben Ayed, Hua-mei Chen, Kumaradevan Punithakumar, Ian Ross, Shuo Li”
Medical Image Analysis 2012.

«Active curve recovery of region boundary patterns»

Mohamed Ben Salah, Ismail Ben Ayed, Amar Mitiche”
IEEE Transactions on Pattern Analysis and Machine Intelligence 2012.

«A convex max-flow approach to distribution-based figure-ground separation»

Kumaradevan Punithakumar, Jing Yuan, Ismail Ben Ayed, Shuo Li, Yuri Boykov”
SIAM Journal on Imaging Sciences 2012.

«Multiregion image segmentation by parametric kernel graph cuts»

Mohamed Ben Salah, Amar Mitiche, Ismail Ben Ayed”
IEEE Transactions on Image Processing 2011.

«Effective level set image segmentation with a kernel induced data term»

Mohamed Ben Salah, Amar Mitiche, Ismail Ben Ayed”
IEEE Transactions on Image Processing 2010.

«Tracking endocardial motion via multiple model filtering»

Kumaradevan Punithakumar, Ismail Ben Ayed, Ali Islam, Ian G.Ross, Shuo Li”
IEEE Transactions on Biomedical Engineering 2010.

«Detection of left ventricular motion abnormality via information measures and Bayesian filtering»

Kumaradevan Punithakumar, Ismail Ben Ayed, Ian G.Ross, Ali Islam, Jaron Chong, Shuo Li”
IEEE Transactions on Information Technology in Biomedicine 2010.

«A statistical overlap prior for variational image segmentation»

Ismail Ben Ayed, Shuo Li, Ian Ross”
International Journal of Computer Vision 2009.

«Embedding overlap priors in variational left ventricle tracking»

Ismail Ben Ayed, Shuo Li, Ian Ross”
IEEE Transactions on Medical Imaging 2009.

«Myocardium tracking via matching distributions»

Ismail Ben Ayed, Shuo Li, Ian Ross, Ali Islam”
International Journal of Computer Assisted Radiology and Surgery 2009.

«A region merging prior for variational level set image segmentation»

Ismail Ben Ayed, Amar Mitiche”
IEEE Transactions on Image Processing 2008.

«Unsupervised variational image segmentation/classification using a weibull observation model»

Ismail Ben Ayed, Nacera Hennane, Amar Mitiche”
IEEE Transactions on Image Processing 2006.

«Polarimetric image segmentation via maximum-likelihood approximation and efficient multiphase level-sets»

Ismail Ben Ayed, Amar Mitiche, Ziad Belhadj”
IEEE Transactions on Pattern Analysis and Machine Intelligence 2006.

«Multiregion level-set partitioning of synthetic aperture radar images»

Ismail Ben Ayed, Amar Mitiche, Ziad Belhadj”
IEEE Transactions on Pattern Analysis and Machine Intelligence 2005.

«Fast Dual Optimization for Medical Image Segmentation»

El-Baz, Ayman and Suri, Jasjit S. and Yuan, Jing and Ayed, Ismail Ben and Fenster, Aaron”

Big Data in Multimodal Medical Imaging 2020.

«AIDE: Annotation-efficient deep learning for automatic medical image segmentation»

Li, C and Wang, R and Liu, Z and Wang, M and Tan, H and Wu, Y and …”

arXiv preprint arXiv łdots 2020.

«Cost-Sensitive Regularization for Diabetic Retinopathy Grading from Eye Fundus Images»

Galdran, Adrian and Dolz, Jose and Chakor, Hadi and Lombaert, Hervé and Ben Ayed, Ismail”

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2020.

«The Little W-Net That Could: State-of-the-Art Retinal Vessel Segmentation with Minimalistic Models»

Galdran, Adrian and Anjos, André and Dolz, José and Chakor, Hadi and Lombaert, Hervé and Ayed, Ismail Ben”

arXiv preprint arXiv łdots 2020.

«Deep Active Learning for Joint Classification & Segmentation with Weak Annotator»

Belharbi, Soufiane and Ayed, Ismail Ben and McCaffrey, Luke and Granger, Eric”

arXiv preprint arXiv łdots 2020.

«Augmented Lagrangian Adversarial Attacks»

Rony, Jérôme and Granger, Eric and Pedersoli, Marco and Ayed, Ismail Ben”

arXiv preprint arXiv:2011.11857 2020.

«Flow-Guided Attention Networks for Video-Based Person Re-Identification»

Kiran, M and Bhuiyan, A and Blais-Morin, L A and Javan, M and …”

arXiv preprint arXiv łdots 2020.

«A Unifying Mutual Information View of Metric Learning: Cross-Entropy vs. Pairwise Losses»

Boudiaf, Malik and Rony, Jérôme and Ziko, Imtiaz Masud and Granger, Eric and Pedersoli, Marco and Piantanida, Pablo and Ayed, Ismail Ben”

łdots on Computer Vision 2020.

«Few-Shot Segmentation Without Meta-Learning: A Good Transductive Inference Is All You Need?»

Boudiaf, Malik and Kervadec, Hoel and Masud, Ziko Imtiaz and Piantanida, Pablo and Ayed, Ismail Ben and Dolz, Jose”

arXiv preprint arXiv łdots 2020.

«Deep Interpretable Classification and Weakly-Supervised Segmentation of Histology Images via Max-Min Uncertainty»

Belharbi, Soufiane and Rony, Jérôme and Dolz, Jose and Ayed, Ismail Ben and McCaffrey, Luke and Granger, Eric”

arXiv preprint arXiv łdots 2020.

«Semi-supervised few-shot learning for medical image segmentation»

Feyjie, Abdur R and Azad, Reza and Pedersoli, Marco and Kauffman, Claude and Ayed, Ismail Ben and Dolz, Jose”

arXiv preprint arXiv łdots 2020.

«Teach me to segment with mixed supervision: Confident students become masters»

Dolz, Jose and Desrosiers, Christian and Ayed, Ismail Ben”

arXiv preprint arXiv:2012.08051 2020.

«Medical Imaging with Deep Learning: MIDL 2020 — Short Paper Track»

Arbel, Tal and Pal, Chris”

arXiv preprint arXiv łdots 2020.

«Quantitative Identification of Nonmuscle-Invasive and Muscle-Invasive Bladder Carcinomas: A Multiparametric MRI Radiomics Analysis»

Xu, Xiaopan and Zhang, Xi and Tian, Qiang and Wang, Huanjun and Cui, Long Biao and Li, Shurong and Tang, Xing and Li, Baojuan and Dolz, Jose and ben Ayed, Ismail and Liang, Zhengrong and Yuan, Jing and Du, Peng and Lu, Hongbing and Liu, Yang”

Journal of Magnetic Resonance Imaging 2019.

«Benchmark on automatic six-month-old infant brain segmentation algorithms: The iSeg-2017 challenge»

Wang, Li and Nie, Dong and Li, Guannan and Puybareau, Élodie and Dolz, Jose and Zhang, Qian and Wang, Fan and Xia, Jing and Wu, Zhengwang and Chen, Jia Wei and Thung, Kim Han and Bui, Toan Duc and Shin, Jitae and Zeng, Guodong and Zheng, Guoyan and Fonov, Vladimir S. and Doyle, Andrew and Xu, Yongchao and Moeskops, Pim and Pluim, Josien P.W. and Desrosiers, Christian and Ayed, Ismail Ben and Sanroma, Gerard and Benkarim, Oualid M. and Casamitjana, Adrià and Vilaplana, Verónica and Lin, Weili and Li, Gang and Shen, Dinggang”

IEEE Transactions on Medical Imaging 2019.

«Constrained Deep Networks: Lagrangian Optimization via Log-Barrier Extensions»

Kervadec, Hoel and Dolz, Jose and Yuan, Jing and Desrosiers, Christian and Granger, Eric and Ayed, Ismail Ben”

arXiv preprint arXiv łdots 2019.

«Kernel Cuts: Kernel and Spectral Clustering Meet Regularization»

Tang, Meng and Marin, Dmitrii and Ben Ayed, Ismail and Boykov, Yuri”

International Journal of Computer Vision 2019.

«Scribble Supervised Annotation Algorithms of Panoptic Segmentation for Autonomous Driving»

Shen, Ruobing and Guthier, Thomas and Tang, Bo and Ayed, Ismail Ben”

NeurIPS Workshop 2019.

«Variational Fair Clustering»

Ziko, Imtiaz Masud and Granger, Eric and Yuan, Jing and Ayed, Ismail Ben”

arXiv preprint arXiv:1906.08207 2019.

«Methods and apparatus to label radiology images»

Ayed, Ismail Ben and Pavlov, Dmitry and Punithakumar, Kumaradevan and Hojjat, Seyed-Parsa and Garvin, Gregory”

US Patent łdots 2018.

«3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study»

Dolz, Jose and Desrosiers, Christian and Ben Ayed, Ismail”

NeuroImage 2018.

«Methods and apparatus to label radiology images»

Ayed, Ismail Ben and Pavlov, Dmitry and Punithakumar, Kumaradevan and Hojjat, Seyed-Parsa and Garvin, Gregory”

US Patent łdots 2018.

«Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images»

Carass, Aaron and Cuzzocreo, Jennifer L. and Han, Shuo and Hernandez-Castillo, Carlos R. and Rasser, Paul E. and Ganz, Melanie and Beliveau, Vincent and Dolz, Jose and Ben Ayed, Ismail and Desrosiers, Christian and Thyreau, Benjamin and Romero, José E. and Coupé, Pierrick and Manjón, José V. and Fonov, Vladimir S. and Collins, D. Louis and Ying, Sarah H. and Onyike, Chiadi U. and Crocetti, Deana and Landman, Bennett A. and Mostofsky, Stewart H. and Thompson, Paul M. and Prince, Jerry L.”

NeuroImage 2018.

«Automating Cardiac Disease Detection»

Afshin, Mariam and Ben Ayed, Ismail and Punithakumar, Kumaradevan and Law, Max and Islam, Ali and Goela, Aashish and Peters, Terry and Li, Shuo”

Substance ÉTS 2017.

«Regularised differentiation for image derivatives»

Mathlouthi, Yosra and Mitiche, Amar and Ayed, Ismail Ben”

IET Image Processing 2017.

«Local Submodularization for Binary Pairwise Energies»

Gorelick, Lena and Boykov, Yuri and Veksler, Olga and Ayed, Ismail Ben and Delong, Andrew”

IEEE Transactions on Pattern Analysis and Machine Intelligence 2017.

«Standalone annotations of axial-view spine images»

Ayed, I B and Miles, B and Garvin, G”

US Patent 9,538,920 2017.

«Automatiser le dépistage des maladies cardiaques»

Afshin, Mariam and Ben Ayed, Ismail and Punithakumar, Kumaradevan and Law, Max and Islam, Ali and Goela, Aashish and Peters, Terry and Li, Shuo”

Substance ÉTS 2017.

«Esophagus segmentation in CT via 3D fully convolutional neural network and random walk:»

Fechter, Tobias and Adebahr, Sonja and Baltas, Dimos and Ben Ayed, Ismail and Desrosiers, Christian and Dolz, Jose”

Medical Physics 2017.

«Spine labeling in axial magnetic resonance imaging via integral kernels»

Miles, Brandon and Ben Ayed, Ismail and Hojjat, Seyed Parsa and Wang, Michael H. and Li, Shuo and Fenster, Aaron and Garvin, Gregory J.”

Computerized Medical Imaging and Graphics 2016.

«Monocular, boundary-preserving joint recovery of scene flow and depth»

Mathlouthi, Yosra and Mitiche, Amar and Ben Ayed, Ismail”

Frontiers in ICT 2016.

«Normalized cut meets MRF»

Tang, Meng and Marin, Dmitrii and Ayed, Ismail Ben and Boykov, Yuri”

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2016.

«Shape distances for binary image segmentation»

Schmidt, Frank R. and Gorelick, Lena and Ayed, Ismail Ben and Boykov, Yuri and Brox, Thomas”

Mathematics and Visualization 2016.

«Detecting left ventricular impaired relaxation in cardiac MRI using moving mesh correspondences»

Punithakumar, Kumaradevan and Ben Ayed, Ismail and Afshin, Mariam and Goela, Aashish and Islam, Ali and Li, Shuo and Boulanger, Pierre and Becher, Harald and Noga, Michelle”

Computer Methods and Programs in Biomedicine 2016.

«Methods and apparatus to generate three-dimensional spinal renderings»

Ayed, Ismail Ben and Punithakumar, Kumaradevan and Hojjat, Seyed-Parsa and Garvin, Gregory”

US Patent 9,064,307 2015.

«Right ventricular segmentation in cardiac MRI with moving mesh correspondences»

Punithakumar, Kumaradevan and Noga, Michelle and Ben Ayed, Ismail and Boulanger, Pierre”

Computerized Medical Imaging and Graphics 2015.

«Automatic detection of vertebrae boundaries in spine images»

Ayed, Ismail Ben and Punithakumar, Kumaradevan and Gill, Sukhdeep and Garvin, Gregory John”

US Patent 8,965,083 2015.

«Distribution Matching with the Bhattacharyya Similarity: A Bound Optimization Framework»

Ayed, Ismail Ben and Punithakumar, Kumaradevan and Li, Shuo”

IEEE Transactions on Pattern Analysis and Machine Intelligence 2015.

«Kernel Cuts: MRF meets Kernel & Spectral Clustering»

Tang, Meng and Marin, Dmitrii and Ayed, Ismail Ben and Boykov, Yuri”

arXiv preprint arXiv:1506.07439 2015.

«Right ventricle segmentation from cardiac MRI: A collation study»

Petitjean, Caroline and Zuluaga, Maria A. and Bai, Wenjia and Dacher, Jean Nicolas and Grosgeorge, Damien and Caudron, JérÔme and Ruan, Su and Ayed, Ismail Ben and Cardoso, M. Jorge and Chen, Hsiang Chou and Jimenez-Carretero, Daniel and Ledesma-Carbayo, Maria J. and Davatzikos, Christos and Doshi, Jimit and Erus, Guray and Maier, Oskar M.O. and Nambakhsh, Cyrus M.S. and Ou, Yangming and Ourselin, Sébastien and Peng, Chun Wei and Peters, Nicholas S. and Peters, Terry M. and Rajchl, Martin and Rueckert, Daniel and Santos, Andres and Shi, Wenzhe and Wang, Ching Wei and Wang, Haiyan and Yuan, Jing”

Medical Image Analysis 2015.

«Monocular concurrent recovery of structure and motion scene flow»

Mitiche, Amar and Mathlouthi, Yosra and Ben Ayed, Ismail”

Frontiers in ICT 2015.

«3D multimodal MRI brain glioma tumor and edema segmentation: A graph cut distribution matching approach»

Njeh, Ines and Sallemi, Lamia and Ayed, Ismail Ben and Chtourou, Khalil and Lehericy, Stephane and Galanaud, Damien and Hamida, Ahmed Ben”

Computerized Medical Imaging and Graphics 2015.

«Systems and methods for tracking power modulation»

Alexander, Steven B and Redhead, Richard”

US Patent 8,144,930 2014.

«Methods, apparatus and articles of manufacture to process cardiac images to detect heart motion abnormalities»

Punithakumar, Kumaradevan and Li, Shuo and Ayed, Ismail Ben and Ross, Ian and Islam, Ali and Rankin, Richard”

US Patent łdots 2014.

«Direct estimation of dense scene flow and depth from a monocular sequence»

Mathlouthi, Yosra and Mitiche, Amar and Ayed, Ismail Ben”

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2014.

«Direct estimation of dense scene flow and depth from a monocular sequence»

Mathlouthi, Yosra and Mitiche, Amar and Ayed, Ismail Ben”

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2014.

«Pseudo-bound optimization for binary energies»

Tang, Meng and Ben Ayed, Ismail and Boykov, Yuri”

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2014.

«Convex-relaxed kernel mapping for image segmentation»

Salah, Mohamed Ben and Ayed, Ismail Ben and Yuan, Jing and Zhang, Hong”

IEEE Transactions on Image Processing 2014.

«Distribution Matching Approaches To Medical Image Segmentation»

Ayed, Ismail Ben”

Computer Vision in Medical Imaging 2014.

«Regional assessment of cardiac left ventricular myocardial function via MRI statistical features»

Afshin, Mariam and Ayed, Ismail Ben and Punithakumar, Kumaradevan and Law, Max and Islam, Ali and Goela, Aashish and Peters, Terry and Li, Shuo”

IEEE Transactions on Medical Imaging 2014.

«Methods, apparatus and articles of manufacture to process cardiac images to detect heart motion abnormalities»

Punithakumar, Kumaradevan and Li, Shuo and Ayed, Ismail Ben and Ross, Ian and Islam, Ali and Rankin, Richard”

US Patent łdots 2014.

«Submodularization for Quadratic Pseudo-Boolean Optimization»

Gorelick, Lena and Boykov, Yuri and Veksler, Olga and Ayed, Ismail Ben and Delong, Andrew”

arXiv preprint arXiv łdots 2013.

«Spine image fusion via graph cuts»

Miles, Brandon and Ayed, Ismail Ben and Law, Max W.K. and Garvin, Greg and Fenster, Aaron and Li, Shuo”

IEEE Transactions on Biomedical Engineering 2013.

«Left ventricle segmentation in MRI via convex relaxed distribution matching»

Nambakhsh, Cyrus M.S. and Yuan, Jing and Punithakumar, Kumaradevan and Goela, Aashish and Rajchl, Martin and Peters, Terry M. and Ayed, Ismail Ben”

Medical Image Analysis 2013.

«A GPU Accelerated Convex Max-Flow Approach to Segmentation of 4-D Left-Ventricular Ultrasound»

Punithakumar, Kumaradevan and Yuan, Jing and Ayed, Ismail Ben and Boulanger, Pierre and Noga, Michelle”

Citeseer 2013.

«Regional heart motion abnormality detection: An information theoretic approach»

Punithakumar, Kumaradevan and Ben Ayed, Ismail and Islam, Ali and Goela, Aashish and Ross, Ian G. and Chong, Jaron and Li, Shuo”

Medical Image Analysis 2013.

«Right ventricle segmentation with probability product kernel constraints»

Nambakhsh, Cyrus M.S. and Peters, Terry M. and Islam, Ali and Ben Ayed, Ismail”

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2013.

«Active curve recovery of region boundary patterns»

Salah, Mohamed Ben and Ayed, Ismail Ben and Mitiche, Amar”

IEEE Transactions on Pattern Analysis and Machine Intelligence 2012.

«Regional heart motion abnormality detection via multiview fusion»

Punithakumar, Kumaradevan and Ayed, Ismail Ben and Islam, Ali and Goela, Aashish and Li, Shuo”

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2012.

«A distribution-matching approach to MRI brain tumor segmentation»

Njeh, Ines and Ben Ayed, Ismail and Ben Hamida, Ahmed”

Proceedings – International Symposium on Biomedical Imaging 2012.

«Vertebral body segmentation in MRI via convex relaxation and distribution matching»

Ben Ayed, Ismail and Punithakumar, Kumaradevan and Minhas, Rashid and Joshi, Rohit and Garvin, Gregory J.”

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2012.

«Pixel level image fusion for medical imaging: an energy minimizing approach»

Miles, Brandon and Law, Max W. K. and Ben-Ayed, Ismail and Garvin, Greg and Fenster, Aaron and Li, Shuo”

Medical Imaging 2012: Computer-Aided Diagnosis 2012.

«A convex max-flow approach to distribution-based figure-ground separation»

Punithakumar, K and Yuan, J and Ayed, I B and Li, S and …”

SIAM Journal on Imaging łdots 2012.

«Max-flow segmentation of the left ventricle by recovering subject-specific distributions via a bound of the Bhattacharyya measure»

Ben Ayed, Ismail and mei Chen, Hua and Punithakumar, Kumaradevan and Ross, Ian and Li, Shuo”

Medical Image Analysis 2012.

«Estimation of the Cardiac Ejection Fraction from image statistics»

Afshin, Mariam and Ben Ayed, Ismail and Islam, Ali and Goela, Aashish and Ross, Ian and Peters, Terry and Li, Shuo”

Proceedings – International Symposium on Biomedical Imaging 2012.

«Global assessment of cardiac function using image statistics in MRI»

Afshin, Mariam and Ben Ayed, Ismail and Islam, Ali and Goela, Aashish and Peters, Terry M. and Li, Shuo”

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2012.

«A neural network learned information measures for heart motion abnormality detection»

Nambakhsh, M. S. and Punithakumar, Kumaradevan and Ben Ayed, Ismail and Goela, Aashish and Islam, Ali and Peters, Terry and Li, Shuo”

Medical Imaging 2011: Image Processing 2011.

«Basic methods»

Mitiche, A and Ayed, I B”

Lecture Notes in Economics and Mathematical Systems 2011.

«A convex max-flow segmentation of LV using subject-specific distributions on cardiac MRI»

Nambakhsh, Mohammad Saleh and Yuan, Jing and Ben Ayed, Ismail and Punithakumar, Kumaradevan and Goela, Aashish and Islam, Ali and Peters, Terry and Li, Shuo”

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2011.

«Graph cuts with invariant object-interaction priors: Application to intervertebral disc segmentation»

Ben Ayed, Ismail and Punithakumar, Kumaradevan and Garvin, Gregory and Romano, Walter and Li, Shuo”

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2011.

«Assessment of regional myocardial function via statistical features in MR images»

Afshin, Mariam and Ben Ayed, Ismail and Punithakumar, Kumaradevan and Law, Max W.K. and Islam, Ali and Goela, Aashish and Ross, Ian and Peters, Terry and Li, Shuo”

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2011.

«Multiregion image segmentation by parametric kernel graph cuts»

Salah, Mohamed Ben and Mitiche, Amar and Ayed, Ismail Ben”

IEEE Transactions on Image Processing 2011.

«Variational level-set segmentation and tracking of left ventricle using field prior»

Afshin, Mariam and Ben Ayed, Ismail and Islam, Ali and Ross, Ian and Peters, Terry and Li, Shuo”

Medical Imaging 2011: Image Processing 2011.

«Tracking endocardial motion via multiple model filtering»

Punithakumar, Kumaradevan and Ayed, Ismail Ben and Islam, Ali and Ross, Ian G. and Li, Shuo”

IEEE Transactions on Biomedical Engineering 2010.

«Region Merging Priors»

Mitiche, Amar and Ayed, Ismail Ben”

Variational and Level Set Methods in Image łdots 2010.

«Motion Based Image Segmentation»

Mitiche, Amar and Ayed, Ismail Ben”

Variational and Level Set Methods in Image łdots 2010.

«Multiregion Segmentation»

Mitiche, Amar and Ayed, Ismail Ben”

Variational and Level Set Methods in Image łdots 2010.

«Effective level set image segmentation with a kernel induced data term»

Ben Salah, Mohamed and Mitiche, Amar and Ben Ayed, Ismail”

IEEE Transactions on Image Processing 2010.

«Regional heart motion abnormality detection via information measures and unscented Kalman filtering»

Punithakumar, Kumaradevan and Ben Ayed, Ismail and Islam, Ali and Ross, Ian G. and Li, Shuo”

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2010.

«Detection of left ventricular motion abnormality via information measures and Bayesian filtering»

Punithakumar, Kumaradevan and Ayed, Ismail Ben and Ross, Ian G. and Islam, Ali and Chong, Jaron and Li, Shuo”

IEEE Transactions on Information Technology in Biomedicine 2010.

«Image Segmentation According to the Movement of Real Objects»

Mitiche, Amar and Ayed, Ismail Ben”

Variational and Level Set Methods in Image łdots 2010.

«Tracking endocardial boundary and motion via graph cut distribution matching and multiple model filtering»

Punithakumar, Kumaradevan and Ayed, Ismail Ben and Islam, Ali and Ross, Ian and Li, Shuo”

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2010.

«A statistical overlap prior for variational image segmentation»

Ben Ayed, Ismail and Li, Shuo and Ross, Ian”

International Journal of Computer Vision 2009.

«Embedding overlap priors in variational left ventricle tracking»

Ben Ayed, Ismail and Li, Shuo and Ross, Ian”

IEEE Transactions on Medical Imaging 2009.

«Level set image segmentation with a statistical overlap constraint»

Ben Ayed, Ismail and Li, Shuo and Ross, Ian”

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2009.

«Myocardium tracking via matching distributions»

Ben Ayed, Ismail and Li, Shuo and Ross, Ian and Islam, Ali”

International Journal of Computer Assisted Radiology and Surgery 2009.

«Left ventricle segmentation via graph cut distribution matching»

Ben Ayed, Ismail and Punithakumar, Kumaradevan and Li, Shuo and Islam, Ali and Chong, Jaron”

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2009.

«Heart motion abnormality detection via an information measure and bayesian filtering»

Punithakumar, Kumaradevan and Li, Shuo and Ben Ayed, Ismail and Ross, Ian and Islam, Ali and Chong, Jaron”

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2009.

«Merging active contours»

Ben Ayed, Ismail and Mitiche, Amar”

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2008.

«A continuous labeling for multiphase graph cut image partitioning»

Salah, Mohamed Ben and Mitiche, Amar and Ayed, Ismail Ben”

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2008.

«Introductory background»

Kalekin-Fishman, Devorah and Langman, Lauren”

Current Sociology 2008.

«A region merging prior for variational level set image segmentation»

Ben Ayed, Ismail and Mitiche, Amar”

IEEE Transactions on Image Processing 2008.

«Area prior constrained level set evolution for medical image segmentation»

Ben Ayed, Ismail and Li, Shuo and Islam, Ali and Garvin, Greg and Chhem, Rethy”

Medical Imaging 2008: Image Processing 2008.

«Embedding a region merging prior in level set vector-valued image segmentation»

Ayed, Ismail Ben and Mitiche, Amar”

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2007.

«Image Models»

Ahuja, Narendra and Schachter, B. J.”

ACM Computing Surveys (CSUR) 1981.